AniProtDB Statistics

All species represented in AniProtDB are listed in the table below. Only species for which data from the NCBI Sequence Read Archive (SRA) was available and passed all of the quality control thresholds described in the Pipeline Overview are included here. Protein counts include transcript isoforms. All proteomes in this list have a minimum BUSCO score of 70%.


Phylum Class Species SRA Project BUSCO
Score (%)		 Total
Proteins		 Proteins
with Pfam
Domains		 Number of
Unique Pfam
Domains		 Proteins
with CDD
Domains		 Number of
Unique CDD
Domains
Annelida Hirudinea Hirudinaria manillensis PRJNA548208 93.9 48,350 35,448 4,777 16,498 3,289
Annelida Hirudinea Poecilobdella javanica PRJNA382185 77.0 34,671 25,479 4,175 11,975 2,552
Annelida Oligochaeta Metaphire guillelmi PRJNA509281 86.7 49,436 37,004 4,696 18,037 3,072
Annelida Oligochaeta Pheretima aspergillum PRJNA509281 85.8 42,566 32,240 4,647 15,980 3,030
Annelida Polychaeta Riftia pachyptila PRJNA534438 86.5 55,318 36,549 5,209 17,004 3,460
Annelida Polychaeta Urechis unicinctus PRJNA394029 86.3 54,277 37,158 4,965 17,401 3,368
Arthropoda Arachnida Mesobuthus martensii PRJNA298268 91.1 36,742 26,993 4,807 12,635 3,412
Arthropoda Arachnida Pardosa pseudoannulata PRJNA497774 95.2 37,893 27,541 4,812 13,499 3,317
Arthropoda Branchiopoda Artemia franciscana PRJNA449186 75.3 16,014 12,438 3,703   5,954 2,305
Arthropoda Branchiopoda Daphnia magna PRJNA533017 87.3 26,804 19,429 4,194   9,095 2,861
Arthropoda Chilopoda Scolopocryptops sexspinosus PRJNA340270 73.1 19,036 14,867 3,787   7,073 2,460
Arthropoda Chilopoda Strigamia maritima PRJNA386859 89.2 53,214 38,672 4,825 18,006 3,460
Arthropoda Diplopoda Andrognathus corticarius PRJNA434333 71.8 18,456 14,332 3,673   6,080 2,252
Arthropoda Diplopoda Californiulus sp PRJNA434333 73.1 16,551 12,856 3,648   5,831 2,312
Arthropoda Entognatha Holacanthella duospinosa PRJNA384703 84.9 31,201 21,414 4,205   9,354 2,610
Arthropoda Entognatha Sinella curviseta PRJNA494047 83.1 28,968 19,374 4,069   9,085 2,494
Arthropoda Insecta Apis mellifera PRJNA510543 91.2 39,662 29,775 4,623 14,655 3,434
Arthropoda Insecta Spodoptera litura PRJNA511360 91.8 30,913 23,316 4,450 11,456 2,978
Arthropoda Malacostraca Carcinus maenas PRJNA400568 87.1 50,154 32,903 5,178 15,686 3,481
Arthropoda Malacostraca Penaeus vannamei PRJNA495361 80.2 20,944 15,508 3,915   7,562 2,427
Arthropoda Maxillopoda Neolepas marisindica PRJNA516093 87.5 45,996 30,324 4,536 14,183 2,932
Arthropoda Maxillopoda Tigriopus californicus PRJNA504307 82.6 42,433 28,465 4,256 13,134 2,754
Arthropoda Merostomata Tachypleus tridentatus PRJNA483308 92.7 64,945 46,184 4,876 21,743 3,475
Brachiopoda Craniforma Novocrania anomala PRJNA295688 74.2 41,246 27,037 4,593 13,165 3,050
Brachiopoda Lingulata Lingula anatina PRJNA286275 75.6 36,199 26,606 4,837 12,911 3,352
Brachiopoda Rhynconellata Liothyrella uva PRJNA314406 75.2 36,770 26,424 4,570 12,374 2,963
Brachiopoda Rhynconellata Terebratalia transversa PRJNA295688 73.4 28,586 21,629 4,431 10,255 2,909
Bryozoa Gymnolaemata Bugula neritina PRJNA244120 84.5 31,164 23,495 4,272 10,741 2,522
Bryozoa Gymnolaemata Membranipora membranacea PRJNA289347 82.5 25,282 18,960 4,187   8,503 2,451
Chaetognatha Sagittoidea Paraspadella gotoi PRJNA487918 71.0 25,409 16,437 3,996   7,718 2,484
Chaetognatha Sagittoidea Sagitta elegans PRJNA487918 73.9 11,543   8,674 3,279   4,018 1,785
Chordata Actinopterygii Acipenser baerii PRJNA274436 94.7 49,168 41,963 5,536 21,338 4,544
Chordata Actinopterygii Thunnus maccoyii PRJNA288188 88.9 17,494 14,648 4,661   6,978 3,345
Chordata Agnatha Eptatretus burgeri PRJNA371391 90.4 54,809 32,561 4,940 14,324 3,371
Chordata Agnatha Lethenteron japonicum PRJNA371391 76.5 25,752 18,063 4,162   8,009 2,641
Chordata Amphibia Rhinatrema bivittatum PRJEB25429 94.6 89,735 42,812 5,784 20,668 5,245
Chordata Amphibia Rhinella marina PRJNA662839 85.9 90,644 47,260 5,332 21,187 4,645
Chordata Ascidiacea Ciona intestinalis PRJNA248170 73.7 23,259 17,884 3,825   8,252 2,533
Chordata Aves Anas platyrhynchos PRJNA563502 77.8 21,874 17,044 4,679   9,172 4,222
Chordata Chondrichthyes Leucoraja erinacea PRJNA288370 78.1 21,174 16,757 4,859   8,552 3,629
Chordata Chondrichthyes Okamejei kenojei PRJNA438719 87.9 50,614 35,756 5,405 17,512 4,368
Chordata Chondrichthyes Scyliorhinus torazame PRJNA371391 90.3 35,443 26,383 5,285 13,332 4,137
Chordata Leptocardii Branchiostoma lanceolatum PRJNA416866 72.1 19,815 15,723 4,431   7,484 3,023
Chordata Mammalia Homo sapiens PRJNA288500 86.0 35,045 24,010 5,217 12,666 4,948
Chordata Mammalia Mus musculus PRJNA288500 83.1 37,064 24,583 5,014 12,631 4,404
Chordata Mammalia Sus scrofa PRJNA481305 73.9 25,484 18,589 4,500   9,130 3,720
Chordata Reptilia Caretta caretta PRJNA663187 92.6 63,381 41,133 5,492 19,705 5,239
Chordata Sarcopterygii Latimeria chalumnae PRJDB1984 85.3 39,116 27,735 5,031 13,230 3,989
Chordata Sarcopterygii Protopterus annectens PRJNA282925 88.0 30,378 23,066 5,227 11,439 4,071
Chordata Thaliacea Salpa thompsoni PRJNA279245 83.9 21,597 16,380 4,044   7,566 2,323
Cnidaria Anthozoa Acropora millepora PRJNA473876 82.6 45,100 28,336 5,022 12,542 3,125
Cnidaria Anthozoa Aiptasia pallida PRJDB7145 81.3 64,589 43,686 5,231 21,153 3,420
Cnidaria Cubozoa Alatina alata PRJNA312373 77.3 26,623 19,216 4,251   9,152 2,557
Cnidaria Cubozoa Tripedalia cystophora PRJNA498176 87.8 37,807 26,030 4,617 12,213 2,820
Cnidaria Hydrozoa Hydra vulgaris PRJNA497966 89.6 28,005 19,282 4,495   8,723 2,748
Cnidaria Hydrozoa Hydractinia symbiolongicarpus PRJNA237004 87.4 26,314 18,937 4,323   8,126 2,598
Cnidaria Scyphozoa Aurelia aurita PRJNA252562 74.6 29,418 21,115 4,058 10,003 2,407
Cnidaria Scyphozoa Nemopilema nomurai PRJNA415234 80.5 23,746 18,058 4,317   8,519 2,569
Ctenophora Tentaculata Bolinopsis mikado PRJDB8655 77.6 29,822 20,251 3,786   9,000 1,953
Ctenophora Tentaculata Mnemiopsis leidyi PRJEB28334 83.0 32,166 22,535 4,524 10,458 2,503
Echinodermata Asteroidea Patiria pectinifera PRJNA371229 78.8 32,190 25,270 4,587 12,319 3,104
Echinodermata Asteroidea Pisaster ochraceus PRJNA603587 84.2 40,435 29,037 4,856 13,754 3,287
Echinodermata Crinoidea Antedon mediterranea PRJNA432136 74.9 29,914 21,828 4,366 10,134 2,772
Echinodermata Echinoidea Mesocentrotus franciscanus PRJNA531463 88.8 28,837 20,348 4,778 10,187 3,447
Echinodermata Echinoidea Paracentrotus lividus PRJNA392084 77.3 26,472 20,339 4,522 10,380 3,275
Echinodermata Holothuroidea Apostichopus japonicus PRJNA597445 82.3 21,821 16,089 4,451   7,558 2,814
Echinodermata Holothuroidea Apostichopus parvimensis PRJNA296688 88.2 26,765 20,528 4,815   9,911 3,167
Echinodermata Ophiuroidea Amphipholis kochii PRJDB8281 84.6 18,714 13,931 4,544   6,490 2,931
Echinodermata Ophiuroidea Amphiura filiformis PRJNA349786 86.5 39,767 28,572 4,809 13,601 3,204
Hemichordata Enteropneusta Ptychodera flava PRJNA284280 91.7 41,721 29,986 5,119 14,970 3,819
Hemichordata Enteropneusta Schizocardium californicum PRJNA296693 74.7 33,175 24,108 4,627 11,456 3,240
Micrognathozoa Micrognathozoa Limnognathia maerski PRJNA289337 75.1 24,361 18,023 3,689   7,695 2,148
Mollusca Aplacophora Stylomenia sulcodoryata PRJNA445319 80.3 18,702 13,116 4,075   5,999 2,394
Mollusca Bivalvia Crassostrea gigas PRJNA543621 83.3 67,342 45,627 4,879 21,792 3,475
Mollusca Bivalvia Mytilus edulis PRJNA525607 84.3 62,704 42,938 4,976 20,319 3,401
Mollusca Cephalopoda Euprymna scolopes PRJNA473394 88.8 42,045 30,104 4,760 13,678 2,489
Mollusca Cephalopoda Octopus bimaculoides PRJNA285380 91.3 35,319 24,095 4,746 11,559 3,145
Mollusca Gastropoda Ambigolimax valentianus PRJDB3972 81.4 28,630 18,615 4,470   9,438 3,026
Mollusca Gastropoda Pomacea canaliculata PRJNA476647 85.9 61,169 38,083 5,140 17,671 3,460
Nematoda Chromadorea Brugia malayi PRJNA294263 95.1 48,043 34,896 4,659 16,098 3,338
Nematoda Enoplea Enoplus brevis PRJEB7588 75.0 47,732 30,469 3,713 14,065 2,166
Nematoda Enoplea Trichinella pseudospiralis PRJNA450330 74.4 30,829 22,364 3,505   9,713 2,050
Nemertea Hoplonemertea Antarctonemertes valida PRJNA485632 70.4 18,597 12,730 3,770   5,566 2,116
Nemertea Pilidiophora Lineus sanguineus PRJNA322119 82.9 51,809 35,310 4,819 16,252 3,244
Nemertea Pilidiophora Ramphogordius lacteus PRJNA322119 76.3 36,039 26,434 4,707 12,733 3,128
Phoronida See note 1 Phoronis australis PRJNA393252 82.0 49,400 30,702 4,922 14,288 3,314
Placozoa See note 1 Hoilungia hongkongensis PRJNA377631 89.5 31,660 24,425 4,306 10,921 2,559
Placozoa See note 1 Trichoplax adhaerens PRJNA394204 79.6 19,065 14,988 3,842   6,717 2,333
Platyhelminthes Catenulida Stenostomum sthenum PRJNA275074 70.2 23,939 17,067 3,605   7,629 1,911
Platyhelminthes Rhabditophora Girardia guanajuatiensis PRJNA551297 74.6 43,151 26,129 3,848 10,641 2,085
Platyhelminthes Rhabditophora Schmidtea mediterranea PRJNA390190 76.5 49,834 31,484 3,947 12,897 2,165
Porifera Calcarea Grantia compressa PRJNA316185 71.0 13,907   9,433 3,420   4,053 1,805
Porifera Calcarea Sycon ciliatum PRJEB7138 80.0 27,591 19,330 4,136   9,289 2,297
Porifera Demospongiae Halichondria panicea PRJNA594151 85.6 59,531 41,015 5,273 18,995 3,039
Porifera Homoscleromorpha Corticium candelabrum PRJNA162903 78.0 47,730 31,622 4,424 12,743 2,475
Priapulida Halicryptomorpha Halicryptus spinulosus PRJNA295688 88.6 49,032 36,097 4,700 15,927 3,133
Rotifera Monogononta Brachionus koreanus PRJNA267756 79.5 28,364 20,994 3,677   8,914 2,016
Rotifera Monogononta Brachionus manjavacas PRJNA345262 77.7 26,524 16,465 3,609   5,900 1,787
Tardigrada Eutardigrada Hypsibius dujardini PRJDB5599 76.3 39,103 25,909 4,060 11,702 2,353
Tardigrada Eutardigrada Paramacrobiotus richtersi PRJNA369152 78.9 55,801 34,102 3,889 15,528 2,254
  1. No class names assigned in this phylum.

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